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Gaining Insights Into Multiple Sclerosis Lesion Characteristics from Brain Tissue Microstructure Information: A Multi-Compartment T2 Relaxometry Approach

Sudhanya Chatterjee , Olivier Commowick , Simon K. Warfield , Christian Barillot
ISMRM 25TH ANNUAL MEETING & EXHIBITION, Apr 2017, Honolulu, Hawaii, USA, United States
Conference papers inserm-01543061v1
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Spatial distribution of multiple sclerosis lesions in the cervical spinal cord

Dominique Eden , Charley Gros , Atef Badji , Sara Dupont , Benjamin de Leener et al.
Brain - A Journal of Neurology , 2019, 142 (3), pp.633-646. ⟨10.1093/brain/awy352⟩
Journal articles inserm-02082374v1
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Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks

Charley Gros , Benjamin de Leener , Atef Badji , Josefina Maranzano , Dominique Eden et al.
NeuroImage, 2019, 184, pp.901 - 915. ⟨10.1016/j.neuroimage.2018.09.081⟩
Journal articles hal-01934566v1
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A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure

Maxime Taquet , Benoit Scherrer , Olivier Commowick , Jurriaan Peters , Mustafa Sahin et al.
IEEE Transactions on Medical Imaging, 2014, 33 (2), pp.504-517. ⟨10.1109/TMI.2013.2289381⟩
Journal articles inserm-00903679v1
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Symmetric Block-Matching Registration for the Distortion Correction of Echo-Planar Images

Renaud Hedouin , Olivier Commowick , Maxime Taquet , Elise Bannier , Benoit Scherrer et al.
IEEE International Symposium on Biomedical Imaging (ISBI), Apr 2015, New York, United States. pp.717-720
Conference papers inserm-01118766v1
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A Fast and Log-Euclidean Polyaffine Framework for Locally Linear Registration

Vincent Arsigny , Olivier Commowick , Nicholas Ayache , Xavier Pennec
Journal of Mathematical Imaging and Vision, 2009, 33 (2), pp.222-238. ⟨10.1007/s10851-008-0135-9⟩
Journal articles inria-00616084v1

Automated delineation of white matter fiber tracts with a multiple region-of-interest approach.

Ralph O. Suarez , Olivier Commowick , Sanjay P. Prabhu , Simon K. K. Warfield
NeuroImage, 2012, 59 (4), pp.3690-3700. ⟨10.1016/j.neuroimage.2011.11.043⟩
Journal articles inserm-00657707v1
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Longitudinal multiple sclerosis lesion segmentation: Resource and challenge

Aaron Carass , Snehashis Roy , Amod Jog , Jennifer L. Cuzzocreo , Elizabeth Magrath et al.
NeuroImage, 2017, 148, pp.77 - 102. ⟨10.1016/j.neuroimage.2016.12.064⟩
Journal articles inserm-01480156v1

Multi-Compartment T2 Relaxometry Model Using Gamma Distribution Representations: A Framework for Quantitative Estimation of Brain Tissue Microstructures

Sudhanya Chatterjee , Olivier Commowick , Simon K. Warfield , Christian Barillot
ISMRM 25TH ANNUAL MEETING & EXHIBITION, Apr 2017, Honolulu, Hawaii, USA, United States
Conference papers inserm-01543073v1
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A Bayes Hilbert Space for Compartment Model Computing in Diffusion MRI

Aymeric Stamm , Olivier Commowick , Alessandra Menafoglio , Simon K Warfield
MICCAI 2018 - International Conference on Medical Image Computing and Computer-Assisted Intervention, Sep 2018, Grenade, Spain. pp.72-80, ⟨10.1007/978-3-030-00931-1_9⟩
Conference papers inserm-01937992v1

Atlas-based automatic segmentation of MR images: validation study on the brainstem in radiotherapy context

Pierre-Yves Bondiau , Grégoire Malandain , Stéphane Chanalet , Pierre-Yves Marcy , Jean-Louis Habrand et al.
International Journal of Radiation Oncology, Biology, Physics, 2005, 61 (1), pp.289-98. ⟨10.1016/j.ijrobp.2004.08.055⟩
Journal articles istex inria-00615664v1
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Estimating A Reference Standard Segmentation with Spatially Varying Performance Parameters: Local MAP STAPLE

Olivier Commowick , Alireza Akhondi-Asl , Simon K. Warfield
IEEE Transactions on Medical Imaging, 2012, 31 (8), pp.1593-1606. ⟨10.1109/TMI.2012.2197406⟩
Journal articles inserm-00697775v1
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Registration and Analysis of White Matter Group Differences with a Multi-Fiber Model

Maxime Taquet , Benoit Scherrer , Olivier Commowick , Jurriaan Peters , Mustafa Sahin et al.
15th International Conference on Medical Image Computing and Computer Assisted Intervention, Oct 2012, Nice, France. pp.313-320
Conference papers inserm-00716110v1
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Non-central chi estimation of multi-compartment models improves model selection by reducing overfitting

Aymeric Stamm , Benoit Scherrer , Stefano Baraldo , Olivier Commowick , Simon K. Warfield et al.
ISMRM, May 2014, Milan, Italy. pp.2623
Conference papers inserm-00993964v1
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Freewater EstimatoR using iNtErpolated iniTialization (FERNET): Toward Accurate Estimation of Free Water in Peritumoral Region Using Single-Shell Diffusion MRI Data

Abdol Aziz Ould Ismail , Drew Parker , Moises Hernandez-Fernandez , Ronald Wolf , Steven Brem et al.
2019
Preprints, Working Papers, ... inserm-02309753v1
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Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure

Olivier Commowick , Audrey Istace , Michael Kain , Baptiste Laurent , Florent Leray et al.
Scientific Reports, 2018, 8 (1), pp.13650. ⟨10.1038/s41598-018-31911-7⟩
Journal articles inserm-01847873v3
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Myocarditis in Athletes Is a Challenge: Diagnosis, Risk Stratification, and Uncertainties

Christian Eichhorn , Loïc Bière , Frédéric Schnell , Christian Schmied , Matthias Wilhelm et al.
JACC: Cardiovascular Imaging, 2020, 13 (Issue 2 Part 1), pp.494-507. ⟨10.1016/j.jcmg.2019.01.039⟩
Journal articles hal-02473901v1
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Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions

Renaud Hédouin , Olivier Commowick , Elise Bannier , Benoit Scherrer , Maxime Taquet et al.
IEEE Transactions on Medical Imaging, 2017, 36 (5), pp.1106 - 1115. ⟨10.1109/TMI.2016.2646920⟩
Journal articles hal-01436561v1

The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.

Thomas W Winkler , Anne E Justice , Mariaelisa Graff , Llilda Barata , Mary F Feitosa et al.
PLoS Genetics, 2015, 11 (10), pp.e1005378. ⟨10.1371/journal.pgen.1005378⟩
Journal articles hal-01218025v1

Efficient Selection of the Most Similar Image in a Database for Critical Structures Segmentation

Olivier Commowick , Grégoire Malandain
Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), Part II, 2007, Brisbane, Australia, Australia. pp.203--210
Conference papers inria-00616045v1

Outils de contourage, utilisation et construction d'atlas anatomiques : exemples des cancers de la tete et du cou

Liliane Ramus , Juliette Thariat , Pierre-Yves Marcy , Yoann Pointreau , Guillaume Bera et al.
Cancer/Radiothérapie, 2010, 14 (3), pp.206-12
Journal articles inria-00616098v1

The DTI Challenge: Toward Standardized Evaluation of Diffusion Tensor Imaging Tractography for Neurosurgery

Sonia Pujol , William Wells , Carlo Pierpaoli , Caroline Brun , James Gee et al.
Journal of Neuroimaging, 2015, pp.8. ⟨10.1111/jon.12283⟩
Journal articles inserm-01185878v1
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Interpolation and Averaging of Multi-Compartment Model Images

Renaud Hedouin , Olivier Commowick , Aymeric Stamm , Christian Barillot
18th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Oct 2015, Munich, Germany. pp.354-362, ⟨10.1007/978-3-319-24571-3_43⟩
Conference papers inserm-01185733v1

Evaluation of Atlas Construction Strategies in the Context of Radiotherapy Planning

Olivier Commowick , Grégoire Malandain
Proceedings of the SA2PM Workshop (From Statistical Atlases to Personalized Models), 2006, Copenhagen, Denmark
Conference papers inria-00615605v1

Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014, Part I

Polina Golland , Nobuhiko Hata , Christian Barillot , Joachim Hornegger , Robert Howe et al.
Golland, Polina; Hata, Nobuhiko; Barillot, Christian; Hornegger, Joachim; Howe, Robert. Medical Image Computing and Computer-Assisted Intervention, Sep 2014, Bosoton, United States. 8673, Springer International Publishing , 2014, Lecture Notes in Computer Sciences, 978-3-319-10403-4. ⟨10.1007/978-3-319-10404-1⟩
Proceedings hal-01576310v1

Global, regional, and national disability-adjusted life years (DALYs) for 306 diseases and injuries and healthy life expectancy (HALE) for 188 countries, 1990-2013: quantifying the epidemiological transition.

Christopher J L Murray , Ryan M Barber , Kyle J Foreman , Ayse Abbasoglu Ozgoren , Foad Abd-Allah et al.
The Lancet, 2015, 386 (10009), pp.2145-91. ⟨10.1016/S0140-6736(15)61340-X⟩
Journal articles hal-01262808v1
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Tissue microstructure information from T2 relaxometry and diffusion MRI can identify multiple sclerosis (MS) lesions undergoing blood-brain barrier breakdown (BBB)

Sudhanya Chatterjee , Olivier Commowick , Onur Afacan , Simon K. Warfield , Christian Barillot et al.
ISMRM 2019 - 27th Annual Meeting & Exhibition, May 2019, Montreal, Canada. pp.1-4
Conference papers inserm-02153311v1

Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014, Part III

Polina Golland , Nobuhiko Hata , Christian Barillot , Joachim Hornegger , Robert Howe et al.
Golland, Polina; Hata, Nobuhiko; Barillot, Christian; Hornegger, Joachim; Howe, Robert. Medical Image Computing and Computer-Assisted Intervention, Sep 2014, Boston, United States. 8675, Springer International Publishing , 2014, Lecture Notes in Computer Sciences, 978-3-319-10442-3. ⟨10.1007/978-3-319-10443-0⟩
Proceedings hal-01576313v1
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Comprehensive Maximum Likelihood Estimation of Diffusion Compartment Models Towards Reliable Mapping of Brain Microstructure

Aymeric Stamm , Olivier Commowick , Simon K Warfield , Simone Vantini
19th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Oct 2016, Athens, Greece. pp.622 - 630, ⟨10.1007/978-3-319-46726-9_72⟩
Conference papers inserm-01349556v1
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Fast Identification of Optimal Fascicle Configurations from Standard Clinical Diffusion MRI Using Akaike Information Criterion

Aymeric Stamm , Olivier Commowick , Patrick Pérez , Christian Barillot
IEEE International Symposium on Biomedical Imaging, Apr 2014, China. pp.238-241
Conference papers inserm-00987802v1