Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping.
Amaury Vaysse
,
Abhirami Ratnakumar
,
Thomas Derrien
,
Erik Axelsson
,
Gerli Rosengren Pielberg
et al.
Journal articles
inserm-00638834v1
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Storing the declaration of human rights on one data DNA molecule
Gouenou Coatrieux
,
Chloé Berton
,
Elsa Dupraz
,
Belaid Hamoum
,
Thomas Derrien
et al.
CominLabs day 2022 , Oct 2022, Rennes, France. pp.1-1
Conference poster
hal-03817852v1
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Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig
Sylvain Foissac
,
Sarah Djebali
,
Kylie Munyard
,
Nathalie Vialaneix
,
Andrea Rau
et al.
2018
Preprints, Working Papers, ...
hal-02791029v1
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The tree that hides the forest: identification of common predisposing loci in several hematopoietic cancers and several dog breeds
Benoit Hédan
,
Edouard Cadieu
,
Maud Rimbault
,
Amaury Vaysse
,
Patrick Devauchelle
et al.
2020
Preprints, Working Papers, ...
hal-03007317v1
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Interest of circulating tumor DNA as a biomarker for canine cancers: illustration in histiocytic sarcoma, oral malignant melanoma and multicentric lymphoma
Anaïs Prouteau
,
Jérôme Alexandre Denis
,
Pauline de Fornel
,
Edouard Cadieu
,
Thomas Derrien
et al.
2020
Preprints, Working Papers, ...
hal-03007320v1
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Identification of long non-coding RNAs in insects genomes
Fabrice Legeai
,
Thomas Derrien
Journal articles
hal-01240461v1
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Circulating tumor DNA is detectable in canine histiocytic sarcoma, oral malignant melanoma, and multicentric lymphoma
Anaïs Prouteau
,
Jérôme Alexandre Denis
,
Pauline de Fornel
,
Edouard Cadieu
,
Thomas Derrien
et al.
Journal articles
hal-03110876v1
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Long non-‐coding RNA in the pea aphid; identification and comparative expression in sexual and asexual embryos
Fabrice Legeai
,
Thomas Derrien
,
Valentin Wucher
,
David Audrey
,
Gaël Le Trionnaire
et al.
Arthropod Genomics Symposium , Jun 2014, Urbana, United States
Conference papers
hal-01091304v1
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An exome sequencing based approach for genome-wide association studies in the dog
Bart J. G. Broeckx
,
Thomas Derrien
,
Stephanie Mottier
,
Valentin Wucher
,
Edouard Cadieu
et al.
Journal articles
hal-01659287v1
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Long noncoding RNA repertoire in chicken liver and adipose tissue
Kévin Muret
,
Christophe C. Klopp
,
Valentin Wucher
,
Diane Esquerré
,
Fabrice Legeai
et al.
Journal articles
hal-01431420v1
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FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome
Valentin Wucher
,
Fabrice Legeai
,
Benoit Hedan
,
Guillaume Rizk
,
Laëtitia Lagoutte
et al.
Journal articles
hal-01532061v1
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PTPN11 mutations in canine and human disseminated histiocytic sarcoma
Benoit Hedan
,
Mélanie Rault
,
Jérôme Abadie
,
Ronan Ulvé
,
Nadine Botherel
et al.
Journal articles
hal-02534873v1
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nBioinformatics Pipeline for Transcriptome Sequencing Analysis
Sarah Djebali
,
Valentin Wucher
,
Sylvain Foissac
,
Christophe Hitte
,
Erwan Corre
et al.
Enhancer RNAs : Methods and Protocols , 1468 (Chapter 14), Humana Press Inc., 2017, Methods in Molecular Biology, 978-1-4939-4033-2.
⟨10.1007/978-1-4939-4035-6_14⟩
Book sections
hal-02788591v1
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Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
Thomas C. Mathers
,
Yazhou Chen
,
Gemy Kaithakottil
,
Fabrice Legeai
,
Sam T. Mugford
et al.
Journal articles
hal-01500475v1
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Fast computation and applications of genome mappability.
Thomas Derrien
,
Jordi Estellé
,
Santiago Marco Sola
,
David G. Knowles
,
Emanuele Raineri
et al.
Journal articles
inserm-00664289v1
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Assessment of transcript reconstruction methods for RNA-seq.
Tamara Steijger
,
Josep F Abril
,
Pär G Engström
,
Felix Kokocinski
,
Martin Akerman
et al.
Journal articles
hal-00909081v1
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Canine Oral Melanoma Genomic and Transcriptomic Study Defines Two Molecular Subgroups with Different Therapeutical Targets
Anais Prouteau
,
Stephanie Mottier
,
Aline Primot
,
Edouard Cadieu
,
Laura Bachelot
et al.
Journal articles
hal-03555450v1
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Coat colour in dogs: identification of the merle locus in the Australian shepherd breed
Benoit Hédan
,
Sébastien Corre
,
Christophe Hitte
,
Stéphane Dréano
,
Thierry Vilboux
et al.
Journal articles
hal-01068391v1
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Long-read assembly of a Great Dane genome highlights the contribution of GC-rich sequence and mobile elements to canine genomes
Julia Halo
,
Amanda L. Pendleton
,
Feichen Shen
,
Aurelien J. Doucet
,
Thomas Derrien
et al.
Journal articles
hal-03206721v1
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Long-read assembly of a Great Dane genome highlights the contribution of GC-rich sequence and mobile elements to canine genomes
Julia Halo
,
Amanda Pendleton
,
Feichen Shen
,
Aurélien Doucet
,
Thomas Derrien
et al.
2020
Preprints, Working Papers, ...
hal-03007309v1
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Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus
Alexandre Cormier
,
Komlan Avia
,
Lieven Sterck
,
Thomas Derrien
,
Valentin Wucher
et al.
Journal articles
hal-03145812v1
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Natural and human-driven selection of a single non-coding body size variant in ancient and modern canids
Jocelyn Plassais
,
Bridgett M Vonholdt
,
Heidi G Parker
,
Alberto Carmagnini
,
Nicolas Dubos
et al.
Journal articles
hal-03555249v1
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Prognostic value of somatic focal amplifications on chromosome 30 in canine oral melanoma
Anaïs Prouteau
,
Florian Chocteau
,
Clotilde de Brito
,
Edouard Cadieu
,
Aline Primot
et al.
Journal articles
hal-02280596v1
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L'analyse comparée des génomes : applications à l'identification de nouveaux gènes canins
Thomas Derrien
Bio-informatique [q-bio.QM]. Université Rennes 1, 2007. Français.
⟨NNT : ⟩
Theses
tel-00656330v1
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The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
Thomas Derrien
,
Rory Johnson
,
Giovanni Bussotti
,
Andrea Tanzer
,
Sarah Djebali
et al.
Journal articles
hal-01205054v1
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Une nouvelle facette du génome de poule : les genes “longs non-codants
Kévin Muret
,
Christophe C. Klopp
,
Valentin Wucher
,
Diane Esquerre
,
Fabrice Legeai
et al.
12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras , Apr 2017, Tours, France.
ITAVI - Institut Technique de l'Aviculture , Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras
Conference poster
hal-01605848v1
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Bioinformatics Pipeline for Transcriptome Sequencing Analysis
Sarah Djebali
,
Valentin Wucher
,
Sylvain Foissac
,
Christophe Hitte
,
Erwan Corre
et al.
Book sections
hal-02789209v1
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Long-non coding RNAs repertoire in liver and adipose tissue in chicken
Kévin Muret
,
Christophe C. Klopp
,
Valentin Wucher
,
Diane D. Esquerre
,
Fabrice Legeai
et al.
XXIV International Plant & Animal Genome (Pag) , Jan 2016, San Diego, United States. 2016
Conference poster
hal-02799305v1
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Pig chromosome X long non-coding RNA annotation and expression
Sarah Djebali
,
Oana Palasca
,
Christian Anton
,
Thomas Derrien
,
Ole Madsen
et al.
PAG XXV - Plant and Animal Genome Conference , Jan 2017, San Diego, United States
Conference papers
hal-02788116v1
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Long-non coding RNAs repertoires in liver and two T lymphocyte cell types in four livestock species
Kévin Muret
,
Sarah Djebali Quelen
,
Thomas Derrien
,
Cédric Cabau
,
Christophe C. Klopp
et al.
36. Conference of the International Society for Animal Genetics (ISAG) , Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Conference poster
hal-01621915v1
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