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Recent allopolyploidy alters Spartina microRNA expression in response to xenobiotic-induced stress

Armand Cave-Radet , Armel Salmon , Loup Tran van Canh , Richard L Moyle , Lara-Simone Pretorius et al.
Plant Molecular Biology, 2022, ⟨10.1007/s11103-022-01328-y⟩
Journal articles hal-03927255v1

Challenges from Next Generation Sequencing analyses in polyploids: Assemblies, alignments, polymorphisms and data storage

Armel Salmon
French Annual Polyploidy and Cytogenetics Meeting, May 2013, Rennes, France
Conference papers hal-01108886v1

Hybrididzation, polyploidy, genome evolution and adaptation in Spartina (Poaceae)

Armel Salmon
“NGS Approaches” seminar, University of Hambourg, University of Hambourg, May 2017, Hambourg, Germany
Conference papers hal-02435137v1
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The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights regarding plastome evolution in the legume family

Guillaume E. Martin , Mathieu Rousseau-Gueutin , Solenn Cordonnier , Oscar Lima , Sophie Michon-Coudouel et al.
Annals of Botany, 2014, 113 (7), pp.1197-1210. ⟨10.1093/aob/mcu050⟩
Journal articles hal-01061902v1

The complete chloroplast genome of Spartina maritima: insights from comparative analyses in the Poaceae family and molecular dating

Sidonie Bellot , Mathieu Rousseau-Gueutin , Guillaume Martin , Julien Boutte , Houda Chelaifa et al.
Génomique environnementale, 2013, Rennes, France
Conference poster hal-03318241v1

Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium)

Ying Bao , Guanjing Hu , Lex E. Flagel , Armel Salmon , Magdalena Bezanilla et al.
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (52), pp.21152-21157. ⟨10.1073/pnas.1115926109⟩
Journal articles hal-00755535v1

Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae)

Julie Ferreira de Carvalho , Julie Poulain , Corinne da Silva , Patrick Wincker , Sophie Michon-Coudouel et al.
Heredity, 2013, 110 (2), pp.181-193. ⟨10.1038/hdy.2012.76⟩
Journal articles hal-00797941v1

Analyse de données transcriptomiques (approche RNA seq).

Armel Salmon
Ecole chercheur 2BIP « Bioinformatique et Biotechnologie des plantes et des interactions biotiques », Nov 2018, Alger, Algérie
Conference papers hal-02441308v1

Ecological genomics and transcriptomics of Spartina

Armel Salmon
The 15th Fudan Advanced Ecology Lecture Series & 2019 Fudan Graduate Summer School on Coastal Ecology and Biodiversity, Jun 2019, Shanghai, France
Conference papers hal-02493264v1
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Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae)

Julie Boutte , Julie Ferreira de Carvalho , Mathieu Rousseau-Gueutin , Julie Poulain , Corinne da Silva et al.
Genome Biology and Evolution, 2016, 8 (9), pp.3030-3044. ⟨10.1093/gbe/evw209⟩
Journal articles hal-01412081v1
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Evolutionary dynamics of transposable elements and satellite DNAs in polyploid Spartina species

Delphine Giraud , Oscar Lima , Virginie Huteau , Olivier Coriton , Julien Boutte et al.
Plant Science, 2021, 302, pp.110671. ⟨10.1016/j.plantsci.2020.110671⟩
Journal articles hal-03101741v1

Targeted Capture of Homoeologous Coding and Noncoding Sequence in Polyploid Cotton

Armel Salmon , Joshua A. Udall , Jeffrey A. Jeddeloh , Jonathan F. Wendel
G3, 2012, 2 (8), pp.921-930. ⟨10.1534/g3.112.003392⟩
Journal articles hal-00738944v1

The Cytonuclear Dimension of Allopolyploid Evolution: An Example from Cotton Using Rubisco

Lei Gong , Armel Salmon , Mi-Jeong Yoo , Kara K. Grupp , Zining Wang et al.
Molecular Biology and Evolution, 2012, 29 (10), pp.3023-3036. ⟨10.1093/molbev/mss110⟩
Journal articles hal-00756690v1

Polyploidy and functional novelty: Origin of the DMSP production in genus Spartina (Poaceae)

Hélène Rousseau , Mathieu Rousseau-Gueutin , Xavier Dauvergne , Morgane Gicquel , Francisco Cabello-Hurtado et al.
Réunion du groupe « Cytogénétique et Polyploïdie", May 2014, Clermont Ferrand, France
Conference papers hal-01089324v1
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Gene and Transposable Element Expression Evolution Following Recent and Past Polyploidy Events in Spartina (Poaceae)

Delphine Giraud , Oscar Lima , Mathieu Rousseau-Gueutin , Armel Salmon , Malika Ainouche et al.
Frontiers in Genetics, 2021, 12, pp.589160. ⟨10.3389/fgene.2021.589160⟩
Journal articles hal-03216905v1

Les contrôles épigénétiques chez les plantes

Armel Salmon
Conférence au Séminaire PHC tassili de l’Université de Bab Ezzouar, Université de Bab Ezzouar, Nov 2017, Alger, Algérie
Conference papers hal-02435182v1

Detecting Epigenetic Effects of Transposable Elements in Plants

Christian Parisod , Armel Salmon , Malika L. Aïnouche , Marie-Angèle Grandbastien
Charles Spillane and Peter C. McKeown. Plant Epigenetics and Epigenomics: Methods and Protocols, 1112, Springer Science, pp.211-217, 2014, Methods in Molecular Biology, vol. 1112, 978-1-62703-772-3; 978-1-62703-773-0. ⟨10.1007/978-1-62703-773-0_14⟩
Book sections hal-00990560v1

Exploring the genome of the salt-marsh Spartina maritima (Poaceae, Chloridoideae) through BAC end sequence analysis

Julie Ferreira de Carvalho , Houda Chelaifa , Julien Boutte , Julie Poulain , Arnaud Couloux et al.
Plant Molecular Biology, 2013, 83 (6), pp.606. ⟨10.1007/s11103-013-0111-7⟩
Journal articles istex hal-00943497v1

Targeted sequence capture as a powerful tool for evolutionary analysis

Corrinne E. Grover , Armel Salmon , Jonathan F. Wendel
American Journal of Botany, 2012, 99 (2), pp.312-319. ⟨10.3732/ajb.1100323⟩
Journal articles hal-00755654v1