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authFullName_s : Stéphane Avner
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ETV6-RUNX1 and RUNX1 directly regulate RAG1 expression: one more step in the understanding of childhood B-cell acute lymphoblastic leukemia leukemogenesis

Hélène Jakobczyk , Yan Jiang , Lydie Debaize , Benoit Soubise , Stéphane Avner et al.
Leukemia, 2022, 36 (2), pp.549-554. ⟨10.1038/s41375-021-01409-9⟩
Journal articles hal-03367380v1

Reprogrammation des cellules MCF7 issues de cancer du sein par hyperhydroxymethylation de l’ADN

Audrey Laurent , Christine Le Peron , Maud Bizot , Stéphane Avner , Raphaël Metivier et al.
EpiPhase 2019, Jun 2019, Toulouse, France
Conference papers hal-02181066v1
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Non-canonical miRNA-RNA base-pairing impedes tumor suppressor activity of miR-16

Anais M. Quemener , Laura Bachelot , Marc Aubry , Stéphane Avner , Delphine Leclerc et al.
Life Science Alliance, 2022, 5 (12), ⟨10.26508/lsa.202201643⟩
Journal articles hal-03811856v1
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Annihilation-free chemical theory of subatomic particles

Stéphane Avner , Patrick Richard
2022
Preprints, Working Papers, ... hal-03233422v3
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Reduction of RUNX1 transcription factor activity by a CBFA2T3-mimicking peptide: application to B cell precursor acute lymphoblastic leukemia

Hélène Jakobczyk , Lydie Debaize , Benoit Soubise , Stéphane Avner , Jeremie Rouger-Gaudichon et al.
Journal of Hematology and Oncology, 2021, 14 (1), pp.47. ⟨10.1186/s13045-021-01051-z⟩
Journal articles hal-03215796v1
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Changes in Gene Expression and Estrogen Receptor Cistrome in Mouse Liver Upon Acute E2 Treatment

Gaëlle Palierne , Aurelie J Fabre , Romain Solinhac , Christine Le Peron , Stéphane Avner et al.
Molecular Endocrinology -Baltimore-, 2016, 30 (7), pp.709-732. ⟨10.1210/me.2015-1311⟩
Journal articles hal-01357623v1

Anchor-based annotation of subsystems : Application to oxidative stress response in prokaryotic genomes.

David Thybert , Stéphane Avner , Céline Lucchetti-Miganeh , Angélique Chéron , Frédérique Barloy-Hubler et al.
ISMBECCB 2009, Jun 2009, Stockholm, France
Conference papers hal-00452315v1

HasSium : a bioinformatic tool for fast reliable sorting and classification of very large samples of pyrosequenced amplicons.

Aurélie Nicolas , Stéphane Avner , Alexis Dufresne , Stéphane Mahé , Eric Petit et al.
JOBIM 2009, Jun 2009, Nantes, France
Conference papers hal-00452319v1

Coupling Exonuclease Digestion with Selective Chemical Labeling for Base-resolution Mapping of 5-Hydroxymethylcytosine in Genomic DNA

Aurelien A. Serandour , Stéphane Avner , Gilles Salbert
Bio-protocol , 2018, 8 (5), ⟨10.21769/BioProtoc.2747⟩
Journal articles hal-02062038v1
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Dynamic ER Interactomes Control the Estrogen-Responsive Trefoil Factor (TFF) Locus Cell-Specific Activities.

Justine Quintin , Christine Le Péron , Gaëlle Palierne , Maud Bizot , Stéphanie Cunha et al.
Molecular and Cellular Biology, 2014, 34 (13), pp.2418-2436. ⟨10.1128/MCB.00918-13⟩
Journal articles hal-00984591v1
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Cell-Cycle-Dependent Reconfiguration of the DNA Methylome during Terminal Differentiation of Human B Cells into Plasma Cells

Gersende Caron , Mourad Hussein , Marta Kulis , Céline Delaloy , Fabrice Chatonnet et al.
Cell Reports, 2015, 13 (5), pp.1059-1071. ⟨10.1016/j.celrep.2015.09.051⟩
Journal articles hal-01219671v1
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Nuclear accumulation of MKL1 in luminal breast cancer cells impairs genomic activity of ERα and is associated with endocrine resistance

Charly Jehanno , Tamara Fernández-Calero , Denis Habauzit , Stéphane Avner , Frédéric Percevault et al.
Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , 2020, 1863 (5), pp.194507. ⟨10.1016/j.bbagrm.2020.194507⟩
Journal articles hal-02565572v1
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Conceiving Particles as Undulating Granular Systems Allows Fundamentally Realist Interpretation of Quantum Mechanics

Stéphane Avner
Entropy, 2021, 23 (10), pp.1338. ⟨10.3390/e23101338⟩
Journal articles hal-03418197v1
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Single-CpG resolution mapping of 5-hydroxymethylcytosine by chemical labeling and exonuclease digestion identifies evolutionarily unconserved CpGs as TET targets

Aurélien Sérandour , Stéphane Avner , Elise A. Mahé , Thierry Madigou , Sylvain Guibert et al.
Genome Biology, 2016, 17 (1), pp.56. ⟨10.1186/s13059-016-0919-y⟩
Journal articles hal-01298009v1
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Electron Mass Predicted From Substructure Stability in Electrodynamical Model

Stéphane Avner , Florence Boillot
Frontiers in Physics, 2020, 8, ⟨10.3389/fphy.2020.00213⟩
Journal articles hal-02927985v1

Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers.

Aurélien A. Sérandour , Stéphane Avner , Frédéric Percevault , Florence Demay , Maud Bizot et al.
Genome Research, 2011, 21 (4), pp.555-65. ⟨10.1101/gr.111534.110⟩
Journal articles hal-00587841v1

CoBalt : Consensus-Based Localization Tool.

David Goudenège , Stéphane Avner , Frédérique Barloy-Hubler
JOBIM 2008, Jun 2008, Lille, France
Conference papers hal-00452362v1
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Dynamic hydroxymethylation of deoxyribonucleic acid marks differentiation-associated enhancers.

Aurélien A. Sérandour , Stéphane Avner , Frédérik Oger , Maud Bizot , Frédéric Percevault et al.
Nucleic Acids Research, 2012, 40 (17), pp.8255-65. ⟨10.1093/nar/gks595⟩
Journal articles inserm-00716879v1
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The hydroxymethylome of multiple myeloma identifies FAM72D as a 1q21 marker linked to proliferation

Fabrice Chatonnet , Amandine Pignarre , Aurelien Serandour , Gersende Caron , Stéphane Avner et al.
Haematologica, 2020, 105 (3), pp.774-783. ⟨10.3324/haematol.2019.222133⟩
Journal articles hal-02165596v1
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CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resources.

David Goudenège , Stéphane Avner , Céline Lucchetti-Miganeh , Frédérique Barloy-Hubler
BMC Microbiology, 2010, 10, pp.88. ⟨10.1186/1471-2180-10-88⟩
Journal articles hal-00471841v1

Oxy-stress : A tool predicting bacterial behaviour upon oxidative stress.

David Thybert , Stéphane Avner , Frédérique Barloy-Hubler , T. Henin , Jean-Marie Nicolas et al.
JOBIM 2007, Jul 2007, Marseille, France
Conference papers hal-00452376v1
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OxyGene: an innovative platform for investigating oxidative-response genes in whole prokaryotic genomes.

David Thybert , Stéphane Avner , Céline Lucchetti-Miganeh , Angélique Chéron , Frédérique Barloy-Hubler et al.
BMC Genomics, 2008, 9, pp.637. ⟨10.1186/1471-2164-9-637⟩
Journal articles hal-00357551v1

Deep inside the biodiversity of superoxide reductases.

Céline Lucchetti-Miganeh , David Thybert , Stéphane Avner , Frédérique Barloy-Hubler
Prokagenomics : 4th European Conference on Prokaryotic Genomics, Oct 2009, Göttingen, Germany
Conference papers hal-00452313v1
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Cytosine modifications modulate the chromatin architecture of transcriptional enhancers

Elise A. Mahé , Thierry Madigou , Aurélien Sérandour , Maud Bizot , Stéphane Avner et al.
Genome Research, 2017, 27 (6), pp.947-958. ⟨10.1101/gr.211466.116⟩
Journal articles hal-01533248v1

SoDium: Small ORF Detection in Intergenic and Unannotated DNA.

Stéphane Avner , Alaguraj Veluchamy , Sankaran Krishnaswamy , Frédérique Barloy-Hubler
ECCB'08, European Conference on Computational Biology, Sep 2008, Cagliari, Italy
Conference papers hal-00452335v1
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Interplay between transcription regulators RUNX1 and FUBP1 activates an enhancer of the oncogene c-KIT and amplifies cell proliferation

Lydie Debaize , Hélène Jakobczyk , Stéphane Avner , Jérémie Gaudichon , Anne-Gäelle Rio et al.
Nucleic Acids Research, 2018, 46 (21), pp.11214-11228. ⟨10.1093/nar/gky756⟩
Journal articles inserm-01885128v1
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TET2-mediated epigenetic reprogramming of breast cancer cells impairs lysosome biogenesis

Audrey Laurent , Thierry Madigou , Maud Bizot , Marion Turpin , Gaëlle Palierne et al.
Life Science Alliance, 2022, 5 (7), pp.e202101283. ⟨10.26508/lsa.202101283⟩
Journal articles hal-03630016v1

Computer-Assisted Automatic Classifications, Storage, Queries and Functional Assignments of Orthologs and In-Paralogs Proteins

David Thybert , Stéphane Avner , Céline Lucchetti-Miganeh , Frédérique Barloy-Hubler
Current Bioinformatics, 2009, 4 (2), pp.129-140
Journal articles hal-00414205v1

OxyGene&Co : Combining CoBalt and OxyGene to improve the functional annotation of oxidative stress subsystems.

David Goudenège , David Thybert , Stéphane Avner , Céline Lucchetti-Miganeh , Frédérique Barloy-Hubler et al.
JOBIM 2009, Jun 2009, Nantes, France
Conference papers hal-00452330v1

Oxy-Gene : an innovative platform to investigate oxidative-induced genes in “prokaryotes” whole genomes.

David Thybert , Stéphane Avner , Céline Lucchetti-Miganeh , Angélique Chéron , Frédérique Barloy-Hubler et al.
JOBIM 2008, Jun 2008, Lille, France
Conference papers hal-00452357v1