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authFullName_s : Corinne da Silva

Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae)

Julie Ferreira de Carvalho , Julie Poulain , Corinne da Silva , Patrick Wincker , Sophie Michon-Coudouel et al.
Heredity, 2013, 110 (2), pp.181-193. ⟨10.1038/hdy.2012.76⟩
Journal articles hal-00797941v1
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Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae)

Julie Boutte , Julie Ferreira de Carvalho , Mathieu Rousseau-Gueutin , Julie Poulain , Corinne da Silva et al.
Genome Biology and Evolution, 2016, 8 (9), pp.3030-3044. ⟨10.1093/gbe/evw209⟩
Journal articles hal-01412081v1

Genome and transcriptome analyses in hexaploid Spartina species (Poaceae) colonizing salt marshes

Julie Ferreira de Carvalho , Julie Poulain , Corinne da Silva , Patrick Wincker , Sophie Coudouel et al.
PAG XIX Plant and Animal Genome Conference, Jan 2012, San Diego, United States
Conference poster hal-01110212v1

A transcriptomic approach to study marine plankton holobionts

Arnaud Meng , Erwan Corre , Pierre Peterlongo , Camille Marchet , Adriana A. Alberti et al.
International Conference on Holobionts, Apr 2017, Paris, France
Conference papers hal-01575069v1

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

Pierre Abad , Jerome Gouzy , Jean-Marc Aury , Philippe Castagnone , Etienne Danchin et al.
Nature Biotechnology, 2008, 26 (8), pp.909-915. ⟨10.1038/nbt.1482⟩
Journal articles hal-01189285v1
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CARNAC-LR : Clustering coefficient-based Acquisition of RNA Communities in Long Reads

Camille Marchet , Lolita Lecompte , Corinne da Silva , Corinne Cruaud , Jean-Marc Aury et al.
JOBIM 2018 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. pp.1-3
Conference papers hal-01930211v1
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CARNAC-LR: De novo Clustering of Gene Expressed Variants in Transcriptomic Long Reads Data Sets

Camille Marchet , Lolita Lecompte , Corinne da Silva , Corinne Cruaud , Jean-Marc Aury et al.
RECOMB-seq 2018 - Eighth RECOMB Satellite Workshop on Massively Parallel Sequencing, Apr 2018, Paris, France. pp.1-2
Conference poster hal-01929963v1

Vers la caractérisation des compartiments codant et répété du génome des spartines polyploïdes par séquençage en masse

Julie Ferreira de Carvalho , Houda Chelaifa , Jiri Macas , Oscar Lima , Sophie Coudouel et al.
Colloque « Biodiversité, Histoire des Espèces, Evolution des Génomes », Jun 2011, Rennes, France
Conference papers hal-01108953v1

Early allopolyploid evolution in the post-Neolithic[i] Brassica napus[/i] oilseed genome

Boulos Chalhoub , France Denoeud , Shengyi Liu , Isobel A. P. Parkin , Haibao Tang et al.
Science, 2014, 345 (6199), pp.950-953. ⟨10.1126/science.1253435⟩
Journal articles hal-01208705v1
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De Novo Clustering of Long Reads by Gene from Transcriptomics Data

Camille Marchet , Lolita Lecompte , Corinne da Silva , Corinne Cruaud , Jean-Marc Aury et al.
Nucleic Acids Research, In press, pp.1-12. ⟨10.1093/nar/gky834⟩
Journal articles hal-01643156v2
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Masculinization of the X Chromosome in the Pea Aphid

Julie Jaquiéry , Claude Rispe , Denis Roze , Fabrice Legeai , Gaël Le Trionnaire et al.
PLoS Genetics, 2013, 9 (8), pp.e1003690. ⟨10.1371/journal.pgen.1003690⟩
Journal articles hal-00916967v1
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A de novo approach to disentangle partner identity and function in holobiont systems

Arnaud Meng , Camille Marchet , Erwan Corre , Pierre Peterlongo , Adriana A. Alberti et al.
Microbiome, 2018, pp.1-35. ⟨10.1101/221424⟩
Journal articles hal-01643153v2

Ecological genomics of invasive polyploids: Case study from hexaploid and allo-dodecaploid Spartina species colonizing salt marshes

Julie Ferreira de Carvalho , Julie Poulain , Corinne da Silva , Patrick Wincker , Sophie Coudouel et al.
International Conference of Ployploidy, Hybridization and Biodiversity (ICPHB), May 2012, Pruhonice, Czech Republic
Conference papers hal-01108907v1

Automatized detection of duplicated copies from NGS data: Application to 45S rDNA and coding genes in the hexaploid Spartina maritime (Poaceae)

Julien Boutte , Benoit Aliaga , Julie Ferreira de Carvalho , Oscar Lima , Sophie Coudouel et al.
Rencontres ALPHY/PhyloSIB, Feb 2013, Lyon, France
Conference papers hal-01108442v1
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Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.

Jonas Collén , Betina Porcel , Wilfrid Carré , Steven G Ball , Cristian Chaparro et al.
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (13), pp.5247-52. ⟨10.1073/pnas.1221259110⟩
Journal articles hal-01073830v1
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Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plant

Elise J Gay , Jessica L Soyer , Nicolas Lapalu , Juliette Linglin , Isabelle Fudal et al.
BMC Biology, 2021, 19 (1), pp.e041118. ⟨10.1186/s12915-021-00989-3⟩
Journal articles hal-03190704v1
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Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules

Camille Sessegolo , Corinne Cruaud , Corinne da Silva , Audric Cologne , Marion Dubarry et al.
Scientific Reports, 2019, 9 (1), pp.14908. ⟨10.1038/s41598-019-51470-9⟩
Journal articles hal-02335574v1

Automatized detection of duplicated copies from NGS data: Application to 45S rDNA and coding genes in hexaploid Spartina species (Poaceae)

Julien Boutte , Benoit Aliaga , Julie Ferreira de Carvalho , Oscar Lima , Sophie Coudouel et al.
International Conference of Ployploidy, Hybridization and Biodiversity (ICPHB), May 2012, Prague, Czech Republic
Conference poster hal-01110201v1