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Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae)
Julie Ferreira de Carvalho
,
Julie Poulain
,
Corinne da Silva
,
Patrick Wincker
,
Sophie Michon-Coudouel
et al.
Journal articles
hal-00797941v1
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Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae)
Julie Boutte
,
Julie Ferreira de Carvalho
,
Mathieu Rousseau-Gueutin
,
Julie Poulain
,
Corinne da Silva
et al.
Journal articles
hal-01412081v1
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Genome and transcriptome analyses in hexaploid Spartina species (Poaceae) colonizing salt marshes
Julie Ferreira de Carvalho
,
Julie Poulain
,
Corinne da Silva
,
Patrick Wincker
,
Sophie Coudouel
et al.
PAG XIX Plant and Animal Genome Conference, Jan 2012, San Diego, United States
Conference poster
hal-01110212v1
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A transcriptomic approach to study marine plankton holobionts
Arnaud Meng
,
Erwan Corre
,
Pierre Peterlongo
,
Camille Marchet
,
Adriana A. Alberti
et al.
International Conference on Holobionts, Apr 2017, Paris, France
Conference papers
hal-01575069v1
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Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita
Pierre Abad
,
Jerome Gouzy
,
Jean-Marc Aury
,
Philippe Castagnone
,
Etienne Danchin
et al.
Journal articles
hal-01189285v1
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CARNAC-LR : Clustering coefficient-based Acquisition of RNA Communities in Long Reads
Camille Marchet
,
Lolita Lecompte
,
Corinne da Silva
,
Corinne Cruaud
,
Jean-Marc Aury
et al.
JOBIM 2018 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. pp.1-3
Conference papers
hal-01930211v1
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CARNAC-LR: De novo Clustering of Gene Expressed Variants in Transcriptomic Long Reads Data Sets
Camille Marchet
,
Lolita Lecompte
,
Corinne da Silva
,
Corinne Cruaud
,
Jean-Marc Aury
et al.
RECOMB-seq 2018 - Eighth RECOMB Satellite Workshop on Massively Parallel Sequencing, Apr 2018, Paris, France. pp.1-2
Conference poster
hal-01929963v1
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Vers la caractérisation des compartiments codant et répété du génome des spartines polyploïdes par séquençage en masse
Julie Ferreira de Carvalho
,
Houda Chelaifa
,
Jiri Macas
,
Oscar Lima
,
Sophie Coudouel
et al.
Colloque « Biodiversité, Histoire des Espèces, Evolution des Génomes », Jun 2011, Rennes, France
Conference papers
hal-01108953v1
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Early allopolyploid evolution in the post-Neolithic[i] Brassica napus[/i] oilseed genome
Boulos Chalhoub
,
France Denoeud
,
Shengyi Liu
,
Isobel A. P. Parkin
,
Haibao Tang
et al.
Journal articles
hal-01208705v1
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De Novo Clustering of Long Reads by Gene from Transcriptomics Data
Camille Marchet
,
Lolita Lecompte
,
Corinne da Silva
,
Corinne Cruaud
,
Jean-Marc Aury
et al.
Journal articles
hal-01643156v2
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Masculinization of the X Chromosome in the Pea Aphid
Julie Jaquiéry
,
Claude Rispe
,
Denis Roze
,
Fabrice Legeai
,
Gaël Le Trionnaire
et al.
Journal articles
hal-00916967v1
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A de novo approach to disentangle partner identity and function in holobiont systems
Arnaud Meng
,
Camille Marchet
,
Erwan Corre
,
Pierre Peterlongo
,
Adriana A. Alberti
et al.
Journal articles
hal-01643153v2
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Ecological genomics of invasive polyploids: Case study from hexaploid and allo-dodecaploid Spartina species colonizing salt marshes
Julie Ferreira de Carvalho
,
Julie Poulain
,
Corinne da Silva
,
Patrick Wincker
,
Sophie Coudouel
et al.
International Conference of Ployploidy, Hybridization and Biodiversity (ICPHB), May 2012, Pruhonice, Czech Republic
Conference papers
hal-01108907v1
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Automatized detection of duplicated copies from NGS data: Application to 45S rDNA and coding genes in the hexaploid Spartina maritime (Poaceae)
Julien Boutte
,
Benoit Aliaga
,
Julie Ferreira de Carvalho
,
Oscar Lima
,
Sophie Coudouel
et al.
Rencontres ALPHY/PhyloSIB, Feb 2013, Lyon, France
Conference papers
hal-01108442v1
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Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.
Jonas Collén
,
Betina Porcel
,
Wilfrid Carré
,
Steven G Ball
,
Cristian Chaparro
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (13), pp.5247-52. ⟨10.1073/pnas.1221259110⟩
Journal articles
hal-01073830v1
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Large-scale transcriptomics to dissect 2 years of the life of a fungal phytopathogen interacting with its host plant
Elise J Gay
,
Jessica L Soyer
,
Nicolas Lapalu
,
Juliette Linglin
,
Isabelle Fudal
et al.
Journal articles
hal-03190704v1
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Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules
Camille Sessegolo
,
Corinne Cruaud
,
Corinne da Silva
,
Audric Cologne
,
Marion Dubarry
et al.
Journal articles
hal-02335574v1
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Automatized detection of duplicated copies from NGS data: Application to 45S rDNA and coding genes in hexaploid Spartina species (Poaceae)
Julien Boutte
,
Benoit Aliaga
,
Julie Ferreira de Carvalho
,
Oscar Lima
,
Sophie Coudouel
et al.
International Conference of Ployploidy, Hybridization and Biodiversity (ICPHB), May 2012, Prague, Czech Republic
Conference poster
hal-01110201v1
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